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spinal [2015/07/05 16:03] fadi |
spinal [2015/07/08 13:13] (current) fadi |
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| Below are the instructions to use the tool: | Below are the instructions to use the tool: | ||
| - | 1. Download and unzip the file [[http://research-fadi.aub.edu.lb/spinal/SCI.zip| SCI.zip ]]. Notice that the file also contains open access third party libraries provided inside it for convenience. Check the original websites and licenses in case you intend to redistribute. | + | 1. Download and unzip the file [[http://research-fadi.aub.edu.lb/spinal/SAMNAToolAndData.zip| SAMNAToolAndData.zip ]]. Notice that the file also contains open access third party libraries provided inside it for convenience. The file dependencies are listed under the project object model file [[http://research-fadi.aub.edu.lb/spinal/pom.xml| pom.xml ]]. |
| + | Source code is also available [[http://research-fadi.aub.edu.lb/spinal/src.zip| src.zip ]] | ||
| - | 2. Open the "Annotation Beta" shortcut file. Once you run the file, an interface will require the destination of the library folder. Select your extraction folder as the destination (the extraction folder should contain a folder named "lib" that contains the libraries. | + | 2. Run the jar file in the typical manner with your latest java runtime environment (jdk-1.8). A jar file compatible with jdk-1.7 is also available [[http://research-fadi.aub.edu.lb/spinal/SAMNA-1.0.jdk1.7.jar| SAMNA-1.0.jar]] |
| 3. Then select "Load Serialized Abstracts" button and choose the file "Spinal_Cord_Injury_Abstracts_04_02_14.xml.ser". | 3. Then select "Load Serialized Abstracts" button and choose the file "Spinal_Cord_Injury_Abstracts_04_02_14.xml.ser". | ||
| 4. Abstracts will be loaded automatically and terms will be highlighted in red and yellow colors. Terms can be removed or added through right click shortcuts. | 4. Abstracts will be loaded automatically and terms will be highlighted in red and yellow colors. Terms can be removed or added through right click shortcuts. | ||